from pandas import DataFrame from pandas import Series from pandas import concat from pandas import read_csv from pandas import datetime from sklearn.metrics import mean_squared_error from sklearn.preprocessing import MinMaxScaler from keras.models import Sequential from keras.layers import Dense from keras.layers import LSTM from math import sqrt from matplotlib import pyplot from numpy import array # date-time parsing function for loading the dataset # def parser(x): # return datetime.strptime('190'+x, '%Y-%m') # convert time series into supervised learning problem def series_to_supervised(data, n_in=1, n_out=1, dropnan=True): n_vars = 1 if type(data) is list else data.shape[1] df = DataFrame(data) cols, names = list(), list() # input sequence (t-n, ... t-1) for i in range(n_in, 0, -1): cols.append(df.shift(i)) names += [('var%d(t-%d)' % (j+1, i)) for j in range(n_vars)] # forecast sequence (t, t+1, ... t+n) for i in range(0, n_out): cols.append(df.shift(-i)) if i == 0: names += [('var%d(t)' % (j+1)) for j in range(n_vars)] else: names += [('var%d(t+%d)' % (j+1, i)) for j in range(n_vars)] # put it all together agg = concat(cols, axis=1) agg.columns = names # drop rows with NaN values if dropnan: agg.dropna(inplace=True) return agg # create a differenced series def difference(dataset, interval=1): diff = list() for i in range(interval, len(dataset)): value = dataset[i] - dataset[i - interval] diff.append(value) return Series(diff) # transform series into train and test sets for supervised learning def prepare_data(series, n_test, n_lag, n_seq): # extract raw values raw_values = series.values # transform data to be stationary diff_series = difference(raw_values, 1) diff_values = diff_series.values diff_values = diff_values.reshape(len(diff_values), 1) # rescale values to -1, 1 scaler = MinMaxScaler(feature_range=(-1, 1)) scaled_values = scaler.fit_transform(diff_values) scaled_values = scaled_values.reshape(len(scaled_values), 1) # transform into supervised learning problem X, y supervised = series_to_supervised(scaled_values, n_lag, n_seq) supervised_values = supervised.values # split into train and test sets train, test = supervised_values[0:-n_test], supervised_values[-n_test:] return scaler, train, test # fit an LSTM network to training data def fit_lstm(train, n_lag, n_seq, n_batch, nb_epoch, n_neurons): # reshape training into [samples, timesteps, features] X, y = train[:, 0:n_lag], train[:, n_lag:] X = X.reshape(X.shape[0], 1, X.shape[1]) # design network model = Sequential() model.add(LSTM(n_neurons, batch_input_shape=(n_batch, X.shape[1], X.shape[2]), stateful=True)) model.add(Dense(y.shape[1])) model.compile(loss='mean_squared_error', optimizer='adam') # fit network for i in range(nb_epoch): model.fit(X, y, epochs=1, batch_size=n_batch, verbose=0, shuffle=False) model.reset_states() return model # make one forecast with an LSTM, def forecast_lstm(model, X, n_batch): # reshape input pattern to [samples, timesteps, features] X = X.reshape(1, 1, len(X)) # make forecast forecast = model.predict(X, batch_size=n_batch) # convert to array return [x for x in forecast[0, :]] # evaluate the persistence model def make_forecasts(model, n_batch, train, test, n_lag, n_seq): forecasts = list() for i in range(len(test)): X, y = test[i, 0:n_lag], test[i, n_lag:] # make forecast forecast = forecast_lstm(model, X, n_batch) # store the forecast forecasts.append(forecast) return forecasts # invert differenced forecast def inverse_difference(last_ob, forecast): # invert first forecast inverted = list() inverted.append(forecast[0] + last_ob) # propagate difference forecast using inverted first value for i in range(1, len(forecast)): inverted.append(forecast[i] + inverted[i-1]) return inverted # inverse data transform on forecasts def inverse_transform(series, forecasts, scaler, n_test): inverted = list() for i in range(len(forecasts)): # create array from forecast forecast = array(forecasts[i]) forecast = forecast.reshape(1, len(forecast)) # invert scaling inv_scale = scaler.inverse_transform(forecast) inv_scale = inv_scale[0, :] # invert differencing index = len(series) - n_test + i - 1 last_ob = series.values[index] inv_diff = inverse_difference(last_ob, inv_scale) # store inverted.append(inv_diff) return inverted # evaluate the RMSE for each forecast time step def evaluate_forecasts(test, forecasts, n_lag, n_seq): for i in range(n_seq): actual = [row[i] for row in test] predicted = [forecast[i] for forecast in forecasts] rmse = sqrt(mean_squared_error(actual, predicted)) print('t+%d RMSE: %f' % ((i+1), rmse)) # plot the forecasts in the context of the original dataset def plot_forecasts(series, forecasts, n_test): # plot the entire dataset in blue pyplot.plot(series.values) # plot the forecasts in red for i in range(len(forecasts)): off_s = len(series) - n_test + i - 1 off_e = off_s + len(forecasts[i]) + 1 xaxis = [x for x in range(off_s, off_e)] yaxis = [series.values[off_s]] + forecasts[i] pyplot.plot(xaxis, yaxis, color='red') # show the plot pyplot.show() # load dataset series = read_csv('snap_yo_fingers_lstm.csv', header=0, parse_dates=[0], index_col=0, squeeze=True) # configure n_lag = 30 n_seq = 7 n_test = 100 n_epochs = 30 n_batch = 1 n_neurons = 3 # prepare data scaler, train, test = prepare_data(series, n_test, n_lag, n_seq) # fit model model = fit_lstm(train, n_lag, n_seq, n_batch, n_epochs, n_neurons) # make forecasts forecasts = make_forecasts(model, n_batch, train, test, n_lag, n_seq) # inverse transform forecasts and test forecasts = inverse_transform(series, forecasts, scaler, n_test+2) actual = [row[n_lag:] for row in test] actual = inverse_transform(series, actual, scaler, n_test+2) # evaluate forecasts evaluate_forecasts(actual, forecasts, n_lag, n_seq) # plot forecasts plot_forecasts(series, forecasts, n_test+2)