{ "cells": [ { "cell_type": "code", "execution_count": 2, "id": "ce9701b6", "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "/home/ec2-user/anaconda3/envs/python3/lib/python3.10/site-packages/pandas/core/computation/expressions.py:21: UserWarning: Pandas requires version '2.8.0' or newer of 'numexpr' (version '2.7.3' currently installed).\n", " from pandas.core.computation.check import NUMEXPR_INSTALLED\n" ] } ], "source": [ "import boto3\n", "import pandas as pd\n", "import numpy as np\n", "import warnings\n", "warnings.filterwarnings(\"ignore\")" ] }, { "cell_type": "code", "execution_count": 1, "id": "e46b2967", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "aiohttp @ file:///home/conda/feedstock_root/build_artifacts/aiohttp_1696765415812/work\n", "aiosignal @ file:///home/conda/feedstock_root/build_artifacts/aiosignal_1667935791922/work\n", "alabaster @ file:///home/conda/feedstock_root/build_artifacts/alabaster_1673645646525/work\n", "anyio @ file:///home/conda/feedstock_root/build_artifacts/anyio_1693488585952/work\n", "argon2-cffi @ file:///home/conda/feedstock_root/build_artifacts/argon2-cffi_1692818318753/work\n", "argon2-cffi-bindings @ file:///home/conda/feedstock_root/build_artifacts/argon2-cffi-bindings_1695386546427/work\n", "arrow @ file:///home/conda/feedstock_root/build_artifacts/arrow_1696128962909/work\n", "astroid @ file:///home/conda/feedstock_root/build_artifacts/astroid_1695739484762/work\n", "astropy @ file:///home/conda/feedstock_root/build_artifacts/astropy_1696716333594/work\n", "asttokens @ file:///home/conda/feedstock_root/build_artifacts/asttokens_1698341106958/work\n", "async-lru @ file:///home/conda/feedstock_root/build_artifacts/async-lru_1690563019058/work\n", "async-timeout @ file:///home/conda/feedstock_root/build_artifacts/async-timeout_1691763562544/work\n", "atomicwrites @ file:///home/conda/feedstock_root/build_artifacts/atomicwrites_1657325823582/work\n", "attrs @ file:///home/conda/feedstock_root/build_artifacts/attrs_1683424013410/work\n", "autopep8 @ file:///home/conda/feedstock_root/build_artifacts/autopep8_1693061251004/work\n", "autovizwidget @ file:///home/conda/feedstock_root/build_artifacts/autovizwidget_1694633627542/work\n", "awscli==1.31.5\n", "Babel @ file:///home/conda/feedstock_root/build_artifacts/babel_1698174530262/work\n", "backcall @ file:///home/conda/feedstock_root/build_artifacts/backcall_1592338393461/work\n", "backports.functools-lru-cache @ file:///home/conda/feedstock_root/build_artifacts/backports.functools_lru_cache_1687772187254/work\n", "beautifulsoup4 @ file:///home/conda/feedstock_root/build_artifacts/beautifulsoup4_1680888073205/work\n", "binaryornot==0.4.4\n", "bitarray @ file:///home/conda/feedstock_root/build_artifacts/bitarray_1696976958910/work\n", "black @ file:///home/conda/feedstock_root/build_artifacts/black-recipe_1698342719324/work\n", "bleach @ file:///home/conda/feedstock_root/build_artifacts/bleach_1696630167146/work\n", "blinker @ file:///home/conda/feedstock_root/build_artifacts/blinker_1696764509355/work\n", "bokeh @ file:///home/conda/feedstock_root/build_artifacts/bokeh_1697011463973/work\n", "boto3==1.33.5\n", "botocore==1.33.5\n", "Bottleneck @ file:///home/conda/feedstock_root/build_artifacts/bottleneck_1696017913939/work\n", "Brotli @ file:///home/conda/feedstock_root/build_artifacts/brotli-split_1695989787169/work\n", "brotlipy @ file:///home/conda/feedstock_root/build_artifacts/brotlipy_1695621686607/work\n", "cached-property @ file:///home/conda/feedstock_root/build_artifacts/cached_property_1615209429212/work\n", "certifi==2023.7.22\n", "cffi @ file:///home/conda/feedstock_root/build_artifacts/cffi_1696001684923/work\n", "chardet @ file:///home/conda/feedstock_root/build_artifacts/chardet_1695468598188/work\n", "charset-normalizer @ file:///home/conda/feedstock_root/build_artifacts/charset-normalizer_1698005359935/work\n", "click @ file:///home/conda/feedstock_root/build_artifacts/click_1692311806742/work\n", "cloudpickle==2.2.1\n", "colorama==0.4.4\n", "comm @ file:///home/conda/feedstock_root/build_artifacts/comm_1691044910542/work\n", "contextlib2==21.6.0\n", "contourpy @ file:///home/conda/feedstock_root/build_artifacts/contourpy_1695554136627/work\n", "cookiecutter @ file:///home/conda/feedstock_root/build_artifacts/cookiecutter_1696003613211/work\n", "coverage @ file:///home/conda/feedstock_root/build_artifacts/coverage_1696281653476/work\n", "cryptography @ file:///home/conda/feedstock_root/build_artifacts/cryptography-split_1698192013143/work\n", "cycler @ file:///home/conda/feedstock_root/build_artifacts/cycler_1696677705766/work\n", "Cython @ file:///home/conda/feedstock_root/build_artifacts/cython_1697605110136/work\n", "cytoolz @ file:///home/conda/feedstock_root/build_artifacts/cytoolz_1695545144718/work\n", "dask @ file:///home/conda/feedstock_root/build_artifacts/dask-core_1697245951516/work\n", "debugpy @ file:///home/conda/feedstock_root/build_artifacts/debugpy_1695534290310/work\n", "decorator @ file:///home/conda/feedstock_root/build_artifacts/decorator_1641555617451/work\n", "defusedxml @ file:///home/conda/feedstock_root/build_artifacts/defusedxml_1615232257335/work\n", "diff-match-patch @ file:///home/conda/feedstock_root/build_artifacts/diff-match-patch_1683670697993/work\n", "dill @ file:///home/conda/feedstock_root/build_artifacts/dill_1690101045195/work\n", "distributed @ file:///home/conda/feedstock_root/build_artifacts/distributed_1697249144856/work\n", "docker==6.1.3\n", "docstring-to-markdown @ file:///home/conda/feedstock_root/build_artifacts/docstring-to-markdown_1697065579403/work\n", "docutils==0.16\n", "dparse==0.6.3\n", "entrypoints @ file:///home/conda/feedstock_root/build_artifacts/entrypoints_1643888246732/work\n", "et-xmlfile @ file:///home/conda/feedstock_root/build_artifacts/et_xmlfile_1674664118162/work\n", "exceptiongroup @ file:///home/conda/feedstock_root/build_artifacts/exceptiongroup_1692026125334/work\n", "executing @ file:///home/conda/feedstock_root/build_artifacts/executing_1667317341051/work\n", "fastapi==0.95.2\n", "fastcache @ file:///home/conda/feedstock_root/build_artifacts/fastcache_1695986192626/work\n", "fastjsonschema @ file:///home/conda/feedstock_root/build_artifacts/python-fastjsonschema_1696171779618/work/dist\n", "filelock @ file:///home/conda/feedstock_root/build_artifacts/filelock_1694629184119/work\n", "flake8 @ file:///home/conda/feedstock_root/build_artifacts/flake8_1669396691980/work\n", "Flask @ file:///home/conda/feedstock_root/build_artifacts/flask_1696349106907/work\n", "Flask-Cors @ file:///home/conda/feedstock_root/build_artifacts/flask-cors_1687783436674/work\n", "fonttools @ file:///home/conda/feedstock_root/build_artifacts/fonttools_1696601216511/work\n", "fqdn @ file:///home/conda/feedstock_root/build_artifacts/fqdn_1638810296540/work/dist\n", "frozenlist @ file:///home/conda/feedstock_root/build_artifacts/frozenlist_1695377693328/work\n", "fsspec @ file:///home/conda/feedstock_root/build_artifacts/fsspec_1697919321618/work\n", "future @ file:///home/conda/feedstock_root/build_artifacts/future_1673596611778/work\n", "gevent @ file:///home/conda/feedstock_root/build_artifacts/gevent_1696750251337/work\n", "gmpy2 @ file:///home/conda/feedstock_root/build_artifacts/gmpy2_1666808654411/work\n", "google-pasta==0.2.0\n", "greenlet @ file:///home/conda/feedstock_root/build_artifacts/greenlet_1698243357024/work\n", "h11==0.14.0\n", "h5py @ file:///home/conda/feedstock_root/build_artifacts/h5py_1696885380106/work\n", "hdijupyterutils @ file:///home/conda/feedstock_root/build_artifacts/hdijupyterutils_1694633580855/work\n", "idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1663625384323/work\n", "imagecodecs @ file:///home/conda/feedstock_root/build_artifacts/imagecodecs_1695139153236/work\n", "imageio @ file:///home/conda/feedstock_root/build_artifacts/imageio_1696854106455/work\n", "imagesize @ file:///home/conda/feedstock_root/build_artifacts/imagesize_1656939531508/work\n", "immutables @ file:///home/conda/feedstock_root/build_artifacts/immutables_1695646628643/work\n", "importlib-metadata @ file:///home/conda/feedstock_root/build_artifacts/importlib-metadata_1688754491823/work\n", "importlib-resources @ file:///home/conda/feedstock_root/build_artifacts/importlib_resources_1695414790617/work\n", "inflection @ file:///home/conda/feedstock_root/build_artifacts/inflection_1598089801258/work\n", "iniconfig @ file:///home/conda/feedstock_root/build_artifacts/iniconfig_1673103042956/work\n", "intervaltree @ file:///home/conda/feedstock_root/build_artifacts/intervaltree_1683532206518/work\n", "ipykernel @ file:///home/conda/feedstock_root/build_artifacts/ipykernel_1698244021190/work\n", "ipython @ file:///home/conda/feedstock_root/build_artifacts/ipython_1696264049390/work\n", "ipython-genutils==0.2.0\n", "ipywidgets @ file:///home/conda/feedstock_root/build_artifacts/ipywidgets_1694607144474/work\n", "isoduration @ file:///home/conda/feedstock_root/build_artifacts/isoduration_1638811571363/work/dist\n", "isort @ file:///home/conda/feedstock_root/build_artifacts/isort_1675033873689/work\n", "itsdangerous @ file:///home/conda/feedstock_root/build_artifacts/itsdangerous_1648147185463/work\n", "jaraco.classes @ file:///home/conda/feedstock_root/build_artifacts/jaraco.classes_1689112411129/work\n", "jedi @ file:///home/conda/feedstock_root/build_artifacts/jedi_1669134318875/work\n", "jeepney @ file:///home/conda/feedstock_root/build_artifacts/jeepney_1649085214306/work\n", "jellyfish @ file:///home/conda/feedstock_root/build_artifacts/jellyfish_1695614587243/work\n", "Jinja2 @ file:///home/conda/feedstock_root/build_artifacts/jinja2_1654302431367/work\n", "jmespath @ file:///home/conda/feedstock_root/build_artifacts/jmespath_1655568249366/work\n", "joblib @ file:///home/conda/feedstock_root/build_artifacts/joblib_1691577114857/work\n", "json5 @ file:///home/conda/feedstock_root/build_artifacts/json5_1688248289187/work\n", "jsonpointer @ file:///home/conda/feedstock_root/build_artifacts/jsonpointer_1695397238043/work\n", "jsonschema @ file:///home/conda/feedstock_root/build_artifacts/jsonschema-meta_1695228989494/work\n", "jsonschema-specifications @ file:///home/conda/feedstock_root/build_artifacts/jsonschema-specifications_1689701150890/work\n", "jupyter @ file:///home/conda/feedstock_root/build_artifacts/jupyter_1696255489086/work\n", "jupyter-console @ file:///home/conda/feedstock_root/build_artifacts/jupyter_console_1678118109161/work\n", "jupyter-events @ file:///home/conda/feedstock_root/build_artifacts/jupyter_events_1697461661078/work\n", "jupyter-lsp @ file:///home/conda/feedstock_root/build_artifacts/jupyter-lsp-meta_1685453365113/work/jupyter-lsp\n", "jupyter_client @ file:///home/conda/feedstock_root/build_artifacts/jupyter_client_1698231991356/work\n", "jupyter_core @ file:///home/conda/feedstock_root/build_artifacts/jupyter_core_1696972408382/work\n", "jupyter_server @ file:///home/conda/feedstock_root/build_artifacts/jupyter_server_1698243876809/work\n", "jupyter_server_terminals @ file:///home/conda/feedstock_root/build_artifacts/jupyter_server_terminals_1673491454549/work\n", "jupyterlab @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_1697059705708/work\n", "jupyterlab-pygments @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_pygments_1649936611996/work\n", "jupyterlab-widgets @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_widgets_1694598704522/work\n", "jupyterlab_server @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_server-split_1694531968623/work\n", "keyring @ file:///home/conda/feedstock_root/build_artifacts/keyring_1696001496056/work\n", "kiwisolver @ file:///home/conda/feedstock_root/build_artifacts/kiwisolver_1695379902431/work\n", "lazy-object-proxy @ file:///home/conda/feedstock_root/build_artifacts/lazy-object-proxy_1695383521402/work\n", "lazy_loader @ file:///home/conda/feedstock_root/build_artifacts/lazy_loader_1692295373316/work\n", "llvmlite==0.40.1\n", "locket @ file:///home/conda/feedstock_root/build_artifacts/locket_1650660393415/work\n", "lz4 @ file:///home/conda/feedstock_root/build_artifacts/lz4_1695448705999/work\n", "markdown-it-py @ file:///home/conda/feedstock_root/build_artifacts/markdown-it-py_1686175045316/work\n", "MarkupSafe @ file:///home/conda/feedstock_root/build_artifacts/markupsafe_1695367434228/work\n", "matplotlib @ file:///home/conda/feedstock_root/build_artifacts/matplotlib-suite_1697011295583/work\n", "matplotlib-inline @ file:///home/conda/feedstock_root/build_artifacts/matplotlib-inline_1660814786464/work\n", "mccabe @ file:///home/conda/feedstock_root/build_artifacts/mccabe_1643049622439/work\n", "mdurl @ file:///home/conda/feedstock_root/build_artifacts/mdurl_1639515908913/work\n", "mistune @ file:///home/conda/feedstock_root/build_artifacts/mistune_1692116650819/work\n", "mkl-fft==1.3.8\n", "mkl-service==2.4.0\n", "mock @ file:///home/conda/feedstock_root/build_artifacts/mock_1689092066756/work\n", "more-itertools @ file:///home/conda/feedstock_root/build_artifacts/more-itertools_1691086935839/work\n", "mpmath @ file:///home/conda/feedstock_root/build_artifacts/mpmath_1678228039184/work\n", "msgpack @ file:///home/conda/feedstock_root/build_artifacts/msgpack-python_1695464100672/work\n", "multidict @ file:///home/conda/feedstock_root/build_artifacts/multidict_1696716075096/work\n", "multiprocess==0.70.15\n", "munkres==1.1.4\n", "mypy-extensions @ file:///home/conda/feedstock_root/build_artifacts/mypy_extensions_1675543315189/work\n", "nbclient @ file:///home/conda/feedstock_root/build_artifacts/nbclient_1684790896106/work\n", "nbconvert @ file:///home/conda/feedstock_root/build_artifacts/nbconvert-meta_1696472732413/work\n", "nbformat @ file:///home/conda/feedstock_root/build_artifacts/nbformat_1690814868471/work\n", "nest-asyncio @ file:///home/conda/feedstock_root/build_artifacts/nest-asyncio_1697083700168/work\n", "networkx @ file:///home/conda/feedstock_root/build_artifacts/networkx_1697702021490/work\n", "nltk @ file:///home/conda/feedstock_root/build_artifacts/nltk_1672696305909/work\n", "nose @ file:///home/conda/feedstock_root/build_artifacts/nose_1602434998960/work\n", "notebook @ file:///home/conda/feedstock_root/build_artifacts/notebook_1697550696415/work\n", "notebook_shim @ file:///home/conda/feedstock_root/build_artifacts/notebook-shim_1682360583588/work\n", "numba @ file:///home/conda/feedstock_root/build_artifacts/numba_1687804769779/work\n", "numexpr @ file:///home/conda/feedstock_root/build_artifacts/numexpr_1636286797833/work\n", "numpy @ file:///home/conda/feedstock_root/build_artifacts/numpy_1653325310407/work\n", "numpydoc @ file:///home/conda/feedstock_root/build_artifacts/numpydoc_1665273484262/work\n", "openpyxl @ file:///home/conda/feedstock_root/build_artifacts/openpyxl_1695464693876/work\n", "overrides @ file:///home/conda/feedstock_root/build_artifacts/overrides_1691338815398/work\n", "packaging==21.3\n", "pandas @ file:///home/conda/feedstock_root/build_artifacts/pandas_1696030088211/work\n", "pandocfilters @ file:///home/conda/feedstock_root/build_artifacts/pandocfilters_1631603243851/work\n", "parso @ file:///home/conda/feedstock_root/build_artifacts/parso_1638334955874/work\n", "partd @ file:///home/conda/feedstock_root/build_artifacts/partd_1695667515973/work\n", "path @ file:///home/conda/feedstock_root/build_artifacts/path_1695468636227/work\n", "pathlib2 @ file:///home/conda/feedstock_root/build_artifacts/pathlib2_1695464058821/work\n", "pathos==0.3.1\n", "pathspec @ file:///home/conda/feedstock_root/build_artifacts/pathspec_1690597952537/work\n", "patsy @ file:///home/conda/feedstock_root/build_artifacts/patsy_1665356157073/work\n", "pexpect @ file:///home/conda/feedstock_root/build_artifacts/pexpect_1667297516076/work\n", "pickleshare @ file:///home/conda/feedstock_root/build_artifacts/pickleshare_1602536217715/work\n", "Pillow @ file:///home/conda/feedstock_root/build_artifacts/pillow_1695247203795/work\n", "pkginfo @ file:///home/conda/feedstock_root/build_artifacts/pkginfo_1673281726124/work\n", "pkgutil_resolve_name @ file:///home/conda/feedstock_root/build_artifacts/pkgutil-resolve-name_1694617248815/work\n", "platformdirs @ file:///home/conda/feedstock_root/build_artifacts/platformdirs_1696272223550/work\n", "plotly @ file:///home/conda/feedstock_root/build_artifacts/plotly_1698272730927/work\n", "pluggy @ file:///home/conda/feedstock_root/build_artifacts/pluggy_1693086607691/work\n", "ply==3.11\n", "pox==0.3.3\n", "ppft==1.7.6.7\n", "prometheus-client @ file:///home/conda/feedstock_root/build_artifacts/prometheus_client_1689032443210/work\n", "prompt-toolkit @ file:///home/conda/feedstock_root/build_artifacts/prompt-toolkit_1688565951714/work\n", "protobuf==4.25.1\n", "psutil @ file:///home/conda/feedstock_root/build_artifacts/psutil_1695367094274/work\n", "psycopg2 @ file:///home/conda/feedstock_root/build_artifacts/psycopg2-split_1694260150819/work\n", "psycopg2-binary @ file:///home/conda/feedstock_root/build_artifacts/psycopg2-split_1697059274958/work/psycopg2-binary\n", "ptyprocess @ file:///home/conda/feedstock_root/build_artifacts/ptyprocess_1609419310487/work/dist/ptyprocess-0.7.0-py2.py3-none-any.whl\n", "pure-eval @ file:///home/conda/feedstock_root/build_artifacts/pure_eval_1642875951954/work\n", "py-cpuinfo @ file:///home/conda/feedstock_root/build_artifacts/py-cpuinfo_1666774466606/work\n", "py4j==0.10.9.5\n", "pyarrow==13.0.0\n", "pyasn1==0.5.1\n", "pycodestyle @ file:///home/conda/feedstock_root/build_artifacts/pycodestyle_1669306857274/work\n", "pycosat @ file:///home/conda/feedstock_root/build_artifacts/pycosat_1696355758174/work\n", "pycparser @ file:///home/conda/feedstock_root/build_artifacts/pycparser_1636257122734/work\n", "pycryptodome @ file:///home/conda/feedstock_root/build_artifacts/pycryptodome_1695466695648/work\n", "pycurl==7.45.1\n", "pydantic==1.10.13\n", "pydocstyle @ file:///home/conda/feedstock_root/build_artifacts/pydocstyle_1673997487070/work\n", "pyerfa @ 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file:///home/conda/feedstock_root/build_artifacts/pyparsing_1690737849915/work\n", "PyQt5==5.15.9\n", "PyQt5-sip==12.12.2\n", "PyQtWebEngine==5.15.4\n", "pyrsistent @ file:///home/conda/feedstock_root/build_artifacts/pyrsistent_1695501252713/work\n", "PySocks @ file:///home/conda/feedstock_root/build_artifacts/pysocks_1661604839144/work\n", "pyspark==3.3.0\n", "pyspnego @ file:///home/conda/feedstock_root/build_artifacts/pyspnego_1696277744607/work\n", "pytest @ file:///home/conda/feedstock_root/build_artifacts/pytest_1698233724984/work\n", "python-dateutil @ file:///home/conda/feedstock_root/build_artifacts/python-dateutil_1626286286081/work\n", "python-json-logger @ file:///home/conda/feedstock_root/build_artifacts/python-json-logger_1677079630776/work\n", "python-lsp-black @ file:///home/conda/feedstock_root/build_artifacts/python-lsp-black_1684593945004/work\n", "python-lsp-jsonrpc @ file:///home/conda/feedstock_root/build_artifacts/python-lsp-jsonrpc_1695528365348/work\n", 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}, { "cell_type": "code", "execution_count": null, "id": "123062f7", "metadata": {}, "outputs": [], "source": [ "df = pd.read_csv('s3://dev-cucumbers/eimpara/pipelines/maze/MAZE_source_202401101643.csv')" ] }, { "cell_type": "code", "execution_count": null, "id": "230585bf", "metadata": {}, "outputs": [], "source": [ "df.shape" ] }, { "cell_type": "code", "execution_count": null, "id": "14d9d633", "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "conda_python3", "language": "python", "name": "conda_python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.10.13" } }, "nbformat": 4, "nbformat_minor": 5 }